Journal: bioRxiv
Article Title: Dysregulation of the p53 pathway provides a therapeutic target in aggressive pediatric sarcomas with stem-like traits
doi: 10.1101/2024.01.17.576012
Figure Lengend Snippet: a) Representative western blot images (right) and densitometric analysis (left) of stemness-associated TFs, p53 and MDM2 in mut-p53 MNNG/HOS and wt-p53 ESFT-15 clones with shRNA-mediated knockdown of SOX2 (shSOX2) compared with their scramble shRNA controls (shCtrl). Data presented as mean ± SD, biological n=3–4. Densitometric analysis of OCT4, c-MYC, and MDM2 proteins is provided in Fig. S10a. b) qPCR analysis of selected stemness-associated TFs in MNNG/HOS and ESFT-15 shSOX2 clones. Data are presented as mean ± SD, biological n=3, technical n=3. Analysis of remaining genes is provided in Fig. S10b. c) Sphere formation assay evaluating stem-like phenotype of MNNG/HOS and ESFT-15 sarcoma cells after SOX2 knockdown. Stem cell frequencies and probability were computed using ELDA software . Data are shown as mean ± 95% confidence interval, biological n=3–4, technical n=5. d) Representative images of sarcospheres formed by shCtrl and shSOX2 clones of MNNG/HOS and ESFT-15 cell lines. All experiments were performed using single cell-derived clones (indicated by numbers). Statistical significance was determined by one-way ANOVA with Welch’s correction followed by post-hoc Dunnett’s test ( a, b ) or Chi-square pairwise test ( c ), *p<0.05, **p<0.01, ***p<0.001.
Article Snippet: Drugs targeting p53 pathway were used for the treatment: RO-5963 (MDM2/MDMX dual inhibitor, #444153, Sigma-Aldrich, St. Louis, MO, USA) and PRIMA-1 MET (mut-p53 reactivator, #SML1789, Sigma-Aldrich).
Techniques: Western Blot, Clone Assay, shRNA, Tube Formation Assay, Software, Derivative Assay